Monitoring your jobs

Using the qstat Command

Check the status of all your jobs, or the jobs belonging to a specific user: qstat -u username
[abc123@login01 ~]$ qstat
job-ID prior name user state submit/start at queue slots ja-task-ID
-----------------------------------------------------------------------------------------------------------------
 1788 0.51637 SPEED-1_5 abc123 r 06/24/2018 09:20:24 all.q@compute021.cm.cluster 30
 1789 0.51637 SANGLE-0 abc123 r 06/24/2018 09:57:09 all.q@compute074.cm.cluster 30
 1930 0.51637 TX-THICK-B abc123 r 06/26/2018 08:43:27 all.q@compute010.cm.cluster 30
 1931 0.51637 DWELL-10mi abc123 r 06/26/2018 08:49:42 all.q@compute028.cm.cluster 30

Check the details of a specific job: qstat -j jobid
[abc123@login01 ~]$ qstat -j 1788
==============================================================
job_number: 1788
exec_file: job_scripts/1788
submission_time: Sun Jun 24 09:20:21 2018
owner: abc123
uid: 1521648242
group: domain
gid: 74200513
sge_o_home: /home-new/abc123
sge_o_log_name: abc123
sge_o_path: /cm/shared/apps/sge/2011.11p1/bin/linux-x64:/apps/MATLAB/R2015a/bin:/apps/intel/composer_xe_2015.3.187/mkl/bin/intel64:/apps/intel/composer_xe_2015.3.187/bin/intel64:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/usr/sbin:/cm/local/apps/environment-modules/3.2.10/bin:/opt/dell/srvadmin/bin:/home-new/abc123/bin
sge_o_shell: /bin/bash
sge_o_workdir: /home-new/abc123/Main-Project/HMIP-BRIDGE/HMIP/SPEED-VARIATION-TX
sge_o_host: login01
account: sge
cwd: /home-new/abc123/Main-Project/HMIP-BRIDGE/HMIP/SPEED-VARIATION-TX
merge: y
mail_list: abc123@login01.cm.cluster
notify: FALSE
job_name: SPEED-1_5
jobshare: 0
hard_queue_list: all.q
shell_list: NONE:/bin/bash
env_list:
script_file: SPEED-1_5.sh
parallel environment: openmpi range: 30
usage 1: cpu=3:14:21:51, mem=4368133.58150 GBs, io=63.29313, vmem=15.683G, maxvmem=19.495G

The qstat command will also show you why your job is not running.

-- AdminUser - 16 Jun 2017
Topic revision: r2 - 27 Jun 2018, AdminUser
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