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CUDA
CUDA is a parallel computing platform and programming model developed by NVIDIA for general purpose computing on GPU devices. CUDA application can dramatically sp...
Caffe
Caffe Interactive Usage on the GPU nodes Grab a GPU node with qlogin: abc123@login ~ $ qlogin q gpu.q abc123@login ~ $ module load caffe Copy the caffe exampl...
CellRanger
Cell Ranger Cell Ranger is a set of analysis pipelines that processes Chromium single cell 3’ RNA seq output to align reads, generate gene cell matrices and perfo...
CheckpointAndRestart
Checkpointing is the action of saving the state of a running process to a checkpoint image file. Restart is the actions to resume the checkpointed application fro...
CommonLanguagesAndCompilers
Common Languages and Compilers The Shamu research cluster contains many open source and licensed languages and compilers. Below is a list. Compilers Intel Parall...
CommonProblems
Common Problems with Shamu This document will try to explain the most common issues and problems with Shamu. Why isn't my job running? Why can't I login? ...
Cuda
Cuda Cuda is a GPU programming language developed by NVIDIA. Currently Shamu contains two (4) very high end GPU nodes consisting of eight (8) Telsa K80 GPU comput...
Number of topics: 11
To display the above search results in a topic, copy-paste the following markup:
%SEARCH{
"^C"
type="regex"
scope="topic"
casesensitive="on"
}%
%INCLUDE{"%TOPIC%" section="title"}%
%INCLUDE{"%TOPIC%" section="form"}%
%INCLUDE{"%TOPIC%" section="searchresults"}%
%INCLUDE{"%TOPIC%" section="title"}%
%INCLUDE{"%TOPIC%" section="form"}%
%INCLUDE{"%TOPIC%" section="searchresults"}%
%INCLUDE{"%TOPIC%" section="querysearchexample"}%
%INCLUDE{"%TOPIC%" section="title"}%
%INCLUDE{"%TOPIC%" section="tabs"}%
%INCLUDE{"%SYSTEMWEB%.SearchHelp"}%
---+!! %MAKETEXT{"Search in [_1] Web" args="<nop>%BASEWEB%"}%
%INCLUDE{"%TOPIC%" section="tabs"}%<noautolink>
<div class='foswikiWebSearchForm'>
<form name='WebSearchForm' action='%SCRIPTURLPATH{view}%/%BASEWEB%/%TOPIC%'>
<input type='hidden' name='tab' value='%URLPARAM{"tab" default="search"}%' />
<div class='foswikiFormSteps'>
<div class='foswikiFormStep'>
<input type='text' class='foswikiInputField foswikiFocus' name='search' value='%URLPARAM{"search" encode="entity"}%' size='40' style='width:99%' placeholder='%MAKETEXT{"Search"}%' />
</div>
<div class='foswikiFormStep'>
%TWISTY{
id="searchOptions"
mode="div"
start="%IF{
"$'URLPARAM{search}'=''"
then="show"
else="hide"
}%"
link="<strong>%MAKETEXT{"Search options"}%</strong>"
showimgleft="%ICONURLPATH{toggleopen}%"
hideimgleft="%ICONURLPATH{toggleclose}%"
}%%IF{
"$'URLPARAM{tab}'='search' OR $'URLPARAM{tab}'='' AND NOT $TAB='advanced'"
then="$percentINCLUDE{$quot%TOPIC%$quot section=$quotoptionssimple$quot}$percent"
}%%IF{
"$'URLPARAM{tab}'='searchadvanced' OR $TAB='advanced'"
then="$percentINCLUDE{$quot%TOPIC%$quot section=$quotoptionsadvanced$quot}$percent"
}%%ENDTWISTY%</div>
<div class='foswikiFormStep'>
<input type='submit' class='foswikiSubmit' value='%MAKETEXT{"Search"}%' />
</div>
</div><!--//foswikiFormSteps-->
</form>
</div></noautolink>
search=%URLPARAM{"search" encode="url"}%;scope=%URLPARAM{"scope" encode="url" default="all"}%;web=%URLPARAM{"web" encode="url"}%;recurse=%URLPARAM{"recurse" encode="url"}%;type=%URLPARAM{"type" encode="url" default="%SEARCHDEFAULTTTYPE%"}%
%INCLUDE{"%TOPIC%" section="searchparamssimple"}%;type=%URLPARAM{"type" encode="url" default="%SEARCHDEFAULTTTYPE%"}%;nosearch=%URLPARAM{"nosearch" encode="url"}%;limit=%URLPARAM{"limit" encode="url"}%;excludetopic=%URLPARAM{"excludetopic" encode="url"}%;casesensitive=%URLPARAM{"casesensitive" encode="url"}%
<noautolink><div class='foswikiTabs'>
<ul>
<li%IF{
"$'URLPARAM{tab}'='search' OR $'URLPARAM{tab}'='' AND NOT $TAB='advanced'"
then=" class='foswikiActiveTab'"
}%><a href='%SCRIPTURL{view}%/%BASEWEB%/%TOPIC%?%INCLUDE{"%TOPIC%" section="searchparamssimple"}%;tab=search'>%MAKETEXT{"Search"}%</a></li>
<li%IF{
"$'URLPARAM{tab}'='searchadvanced' OR $TAB='advanced'" then=" class='foswikiActiveTab'"
}%><a href='%SCRIPTURL{view}%/%BASEWEB%/%TOPIC%?%INCLUDE{"%TOPIC%" section="searchparamsadvanced"}%;tab=searchadvanced'>%MAKETEXT{"Advanced search"}%</a></li>
<li%IF{
"$'URLPARAM{tab}'='az'" then=" class='foswikiActiveTab'"
}%><a href='%SCRIPTURL{view}%/%BASEWEB%/%TOPIC%?%INCLUDE{"%TOPIC%" section="searchparamsadvanced"}%;tab=az'>%MAKETEXT{"A-Z"}%</a></li>
<li%IF{
"$'URLPARAM{tab}'='help'" then=" class='foswikiActiveTab'"
}%><a href='%SCRIPTURL{view}%/%BASEWEB%/%TOPIC%?%INCLUDE{"%TOPIC%" section="searchparamsadvanced"}%;tab=help'>%MAKETEXT{"Help"}%</a></li>
</ul>
<div class='foswikiClear'></div>
</div></noautolink>
<table id='foswikiSearchTable' class='foswikiSearchTable' border='0' cellspacing='0' cellpadding='0'>
<tr>
<th>%MAKETEXT{"Search where:"}%</th>
<td>
<input type='radio' class='foswikiRadioButton' id='textbody' name='scope' value='text' %IF{
"'%URLPARAM{"scope"}%'='text'"
then="checked='checked'"
}% /><label for='textbody'> %MAKETEXT{"Text body"}%</label><br />
<input type='radio' class='foswikiRadioButton' id='topictitle' name='scope' value='topic' %IF{
"'%URLPARAM{"scope" default="all"}%'='topic'"
then="checked='checked'"
}% /><label for='topictitle'> %MAKETEXT{"Topic title"}% </label><br />
<input type='radio' class='foswikiRadioButton' id='both' name='scope' value='all' %IF{
"'%URLPARAM{"scope" default="all"}%'='all'"
then="checked='checked'"
}% /><label for='both'> %MAKETEXT{"Both body and title"}%</label>
<hr />
<input type='checkbox' class='foswikiCheckbox' id='web' name='web' value='all' %IF{
"'%URLPARAM{web}%'='all'"
then="checked='checked'"
}% /><label for='web'> %MAKETEXT{"All public webs"}%</label> <span class='foswikiSmall'>%MAKETEXT{"(otherwise search [_1] Web only)" args="<nop>%BASEWEB%"}%</span>
<input type='checkbox' class='foswikiCheckbox' id='recurse' name='recurse' value='on' %IF{
"'%URLPARAM{recurse}%'='on'"
then="checked='checked'"
}% /><label for='recurse'> %MAKETEXT{"Subwebs"}%</label>
</td>
</tr>
</table>
<table id='foswikiSearchTable' class='foswikiSearchTable' border='0' cellspacing='0' cellpadding='0'>
<tr>
<th>%MAKETEXT{"Search where:"}%</th>
<td>
<input type='radio' class='foswikiRadioButton' id='textbody' name='scope' value='text' %IF{
"'%URLPARAM{"scope"}%'='text'"
then="checked='checked'"
}% /><label for='textbody'> %MAKETEXT{"Text body"}%</label><br />
<input type='radio' class='foswikiRadioButton' id='topictitle' name='scope' value='topic' %IF{
"'%URLPARAM{"scope" default="all"}%'='topic'"
then="checked='checked'"
}% /><label for='topictitle'> %MAKETEXT{"Topic title"}%</label><br />
<input type='radio' class='foswikiRadioButton' id='both' name='scope' value='all' %IF{
"'%URLPARAM{"scope" default="all"}%'='all'"
then="checked='checked'"
}% /><label for='both'> %MAKETEXT{"Both body and title"}%</label>
<hr />
<input type='checkbox' class='foswikiCheckbox' id='web' name='web' value='all' %IF{
"'%URLPARAM{web}%'='all'"
then="checked='checked'"
}% /><label for='web'> %MAKETEXT{"All public webs"}%</label> <span class='foswikiSmall'>%MAKETEXT{"(otherwise search [_1] Web only)" args="<nop>%BASEWEB%"}%</span>
<input type='checkbox' class='foswikiCheckbox' id='recurse' name='recurse' value='on' %IF{
"'%URLPARAM{recurse}%'='on'"
then="checked='checked'"
}% /><label for='recurse'> %MAKETEXT{"Subwebs"}%</label>
</td>
</tr>
<tr>
<th>%MAKETEXT{"Sort results by:"}%</th>
<td>
<input type='radio' class='foswikiRadioButton' id='topic' name='order' value='topic' %IF{
"'%URLPARAM{"order" default="topic"}%'='topic'"
then="checked='checked'"
}% /><label for='topic'> %MAKETEXT{"Topic name"}%</label><br />
<input type='radio' class='foswikiRadioButton' id='modified' name='order' value='modified' %IF{
"'%URLPARAM{order}%'='modified'"
then="checked='checked'"
}% /><label for='modified'> %MAKETEXT{"Last modified time"}%</label><br />
<input type='radio' class='foswikiRadioButton' id='editby' name='order' value='editby' %IF{
"'%URLPARAM{order}%'='editby'"
then="checked='checked'"
}% /><label for='editby'> %MAKETEXT{"Last editor"}%</label>
<hr />
<input type='checkbox' class='foswikiCheckbox' name='reverse' id='reverse' %IF{
"'%URLPARAM{reverse}%'='on'"
then="checked='checked'"
}% /><label for='reverse'> %MAKETEXT{"In reversed order"}%</label>
</td>
</tr>
<tr>
<th>%MAKETEXT{"Make search:"}%</th>
<td>%MAKETEXT{"Selections apply to search in \"text body\""}% <span class='foswikiUnvisited foswikiSmall'>%POPUPWINDOW{"%SYSTEMWEB%.SearchHelp" label="%MAKETEXT{"Help"}%"}%</span>
<hr />
<input type='checkbox' class='foswikiCheckbox' id='casesensitive' name='casesensitive' %IF{
"'%URLPARAM{casesensitive}%'='on'"
then="checked='checked'"
}% /><label for='casesensitive'> %MAKETEXT{"Case sensitive"}%</label><br />
<hr />
<input type='radio' class='foswikiRadioButton' id='word' name='type' value='word' %IF{
"'%URLPARAM{"type" default="%SEARCHDEFAULTTTYPE%"}%'='word'"
then="checked='checked'"
}% /><label for='word'> %MAKETEXT{"Word search"}%</label><br />
<input type='radio' class='foswikiRadioButton' id='keyword' name='type' value='keyword' %IF{
"'%URLPARAM{"type" default="%SEARCHDEFAULTTTYPE%"}%'='keyword'"
then="checked='checked'"
}% /><label for='keyword'> %MAKETEXT{"Keyword search"}%</label><br />
<input type='radio' class='foswikiRadioButton' id='literal' name='type' value='literal' %IF{
"'%URLPARAM{type}%'='literal'"
then="checked='checked'"
}% /><label for='literal'> %MAKETEXT{"Literal search"}%</label><br />
<input type='radio' class='foswikiRadioButton' id='regex' name='type' value='regex' %IF{
"'%URLPARAM{type}%'='regex'"
then="checked='checked'"
}% /><label for='regex'> %MAKETEXT{"Regular expression search"}%</label><br />
<input type='radio' class='foswikiRadioButton' id='query' name='type' value='query' %IF{
"'%URLPARAM{type}%'='query'"
then="checked='checked'"
}% /><label for='query'> %MAKETEXT{"Query Search"}%</label>
</td>
</tr>
<tr>
<th><b>%MAKETEXT{"Don't show:"}%</b></th>
<td><input type='checkbox' class='foswikiCheckbox' id='nosearch' name='nosearch' %IF{
"'%URLPARAM{nosearch}%'='on'"
then="checked='checked'"
}% /><label for='nosearch'> %MAKETEXT{"Search string"}%</label><br />
<input type='checkbox' class='foswikiCheckbox' id='nosummary' name='nosummary' %IF{
"'%URLPARAM{nosummary}%'='on'"
then="checked='checked'"
}% /><label for='nosummary'> %MAKETEXT{"Summaries"}%</label><br />
<input type='checkbox' class='foswikiCheckbox' id='nototal' name='nototal' %IF{
"'%URLPARAM{nototal}%'='on'"
then="checked='checked'"
}% /><label for='nototal'> %MAKETEXT{"Total matches"}%</label><br />
</td>
</tr>
<tr>
<th class='foswikiLast'>%MAKETEXT{"Limit results to:"}%</th>
<td class='foswikiLast'><input type='text' class='foswikiInputField' id='limit' name='limit' size='3' value='%IF{
"'%URLPARAM{"limit" default="all"}%'='all'"
then="all"
else="%URLPARAM{limit}%"
}%' /><label for='limit'> %MAKETEXT{"Topics per web"}% </label><span class='foswikiSmall'>%MAKETEXT{"(=all= to show all topics)"}%</span>
</td>
</tr>
</table>
%IF{
"$'URLPARAM{search}'!=''"
then="<h2>%MAKETEXT{"Search results"}%</h2>
$percentINCLUDE{$quot%SYSTEMWEB%.%TOPIC%$quot section=$quotsearchfeed$quot}$percent"
}%%SEARCH{
"%URLPARAM{"search" encode="entities, quote"}%" decode="entities"
type="%URLPARAM{"type" default="word"}%"
scope="%URLPARAM{"scope" encode="safe, quote"}%"
web="%URLPARAM{"web" encode="safe, quote"}%"%IF{
"{EnableHierarchicalWebs}"
then="recurse=\"%URLPARAM{"recurse" encode="safe, quote"}%\""
}%
topic="%URLPARAM{"searchtopic" encode="safe, quote"}%"
excludetopic="%URLPARAM{"excludetopic" encode="safe, quote"}%"
nosearch="%URLPARAM{"nosearch" encode="safe, quote"}%"
casesensitive="%URLPARAM{"casesensitive" encode="safe, quote"}%"
nosummary="%URLPARAM{"nosummary" encode="safe, quote"}%"
nototal="%URLPARAM{"nototal" encode="safe, quote"}%"
order="%URLPARAM{"order" encode="safe, quote"}%"
reverse="%URLPARAM{"reverse" encode="safe, quote"}%"
pager="on"
limit="%URLPARAM{"limit" encode="safe, quote" default="%DEFAULTPAGESIZE%"}%"
pagesize="%DEFAULTPAGESIZE%"
zeroresults="%IF{
"defined search and $search!=''"
then="on"
else="off"
}%"
}%
<div>%ICON{"rss-small"}%%INCLUDE{"%SYSTEMWEB%.%TOPIC%" section="searchfeedlink"}%</div>
<a href='%SCRIPTURL{"view"}%/%BASEWEB%/WebRss?search=%URLPARAM{"search" encode="url"}%;type=%IF{
"'%URLPARAM{"regex"}%'='on' OR '%URLPARAM{"type"}%'='regex'"
then="regex"
else="word"
}%;excludetopic=%URLPARAM{"excludetopic" encode="url" default="%TOPIC%,%HOMETOPIC%,%STATISTICSTOPIC%"}%;web=%URLPARAM{"web" encode="url" default="%BASEWEB%"}%;recurse=%URLPARAM{"recurse" encode="url"}%;limit=%URLPARAM{"limit" encode="url" default="all"}%;scope=%URLPARAM{"scope" encode="url" default="text"}%;casesensitive=%URLPARAM{"casesensitive" encode="url" default="off"}%'>%MAKETEXT{"Get notified on changes on this search"}%</a>
%IF{
"$'URLPARAM{search}'!=''"
then='$percentINCLUDE{$quot%TOPIC%$quot section=$quot_querysearchexample$quot}$percent'
}%
<p /><div class='foswikiHelp'>
%MAKETEXT{"To display the above search results in a topic, copy-paste the following markup:"}%
<pre class='tml'>
%<nop>SEARCH{
"%URLPARAM{"search" encode="entities, quote"}%"
type="%URLPARAM{"type" default="%SEARCHDEFAULTTTYPE%"}%"%FORMAT{
"scope,web,recurse,nosearch,casesensitive,nosummary,nototal,order,reverse,limit"
type="string"
header="$n"
format="$percntIF{
\"(defined $item AND $'$item') AND ('$item' != 'recurse' OR {EnableHierarchicalWebs})\"
then=\" $item=\\"$percntURLPARAM{\"$item\" encode=\"safe, quote\"}$percnt\\"$n\"
}$percnt"
separator=""
}%}%
</pre>
</div>
%IF{
"$'URLPARAM{searchletter}'='%letter%'"
then="<strong>%letter%</strong>"
else="<a href='%SCRIPTURLPATH{"search"}%/%BASEWEB%/%TOPIC%?scope=topic&type=regex&search=%5E%letter%;$percentINCLUDE{$quot%TOPIC%$quot section=$quotsearchparamsadvanced$quot}$percent;searchletter=%letter%;tab=az'>%letter%</a>"
}%
%INCLUDE{"%TOPIC%" section="title"}%
%INCLUDE{"%TOPIC%" section="tabs"}%
<div class='foswikiWebSearchForm'>
%MAKETEXT{"List topics that start with the letter:"}% %INCLUDE{"%TOPIC%" section="letterlist"}%
</div>
%IF{
"$'URLPARAM{searchletter}'"
then="$percentINCLUDE{$quot%TOPIC%$quot section=$quotsearchresults$quot}$percent$percentINCLUDE{$quot%TOPIC%$quot section=$quotquerysearchexample$quot}$percent"
}%
<div class='foswikiHorizontalList foswikiUnvisited'>
<ul>
<li>%INCLUDE{"%TOPIC%" section="searchbyletterlink" letter="A"}%</li>
<li>%INCLUDE{"%TOPIC%" section="searchbyletterlink" letter="B"}%</li>
<li>%INCLUDE{"%TOPIC%" section="searchbyletterlink" letter="C"}%</li>
<li>%INCLUDE{"%TOPIC%" section="searchbyletterlink" letter="D"}%</li>
<li>%INCLUDE{"%TOPIC%" section="searchbyletterlink" letter="E"}%</li>
<li>%INCLUDE{"%TOPIC%" section="searchbyletterlink" letter="F"}%</li>
<li>%INCLUDE{"%TOPIC%" section="searchbyletterlink" letter="G"}%</li>
<li>%INCLUDE{"%TOPIC%" section="searchbyletterlink" letter="H"}%</li>
<li>%INCLUDE{"%TOPIC%" section="searchbyletterlink" letter="I"}%</li>
<li>%INCLUDE{"%TOPIC%" section="searchbyletterlink" letter="J"}%</li>
<li>%INCLUDE{"%TOPIC%" section="searchbyletterlink" letter="K"}%</li>
<li>%INCLUDE{"%TOPIC%" section="searchbyletterlink" letter="L"}%</li>
<li>%INCLUDE{"%TOPIC%" section="searchbyletterlink" letter="M"}%</li>
<li>%INCLUDE{"%TOPIC%" section="searchbyletterlink" letter="N"}%</li>
<li>%INCLUDE{"%TOPIC%" section="searchbyletterlink" letter="O"}%</li>
<li>%INCLUDE{"%TOPIC%" section="searchbyletterlink" letter="P"}%</li>
<li>%INCLUDE{"%TOPIC%" section="searchbyletterlink" letter="Q"}%</li>
<li>%INCLUDE{"%TOPIC%" section="searchbyletterlink" letter="R"}%</li>
<li>%INCLUDE{"%TOPIC%" section="searchbyletterlink" letter="S"}%</li>
<li>%INCLUDE{"%TOPIC%" section="searchbyletterlink" letter="T"}%</li>
<li>%INCLUDE{"%TOPIC%" section="searchbyletterlink" letter="U"}%</li>
<li>%INCLUDE{"%TOPIC%" section="searchbyletterlink" letter="V"}%</li>
<li>%INCLUDE{"%TOPIC%" section="searchbyletterlink" letter="W"}%</li>
<li>%INCLUDE{"%TOPIC%" section="searchbyletterlink" letter="X"}%</li>
<li>%INCLUDE{"%TOPIC%" section="searchbyletterlink" letter="Y"}%</li>
<li class='foswikiLast'>%INCLUDE{"%TOPIC%" section="searchbyletterlink" letter="Z"}%</li>
</ul>
<div class='foswikiClear'></div>
</div>