is a classical molecular dynamics code, and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. LAMMPS
has potentials for solid-state materials (metals, semiconductors) and soft matter (biomolecules, polymers) and coarse-grained or mesoscopic systems. It can be used to model atoms or, more generically, as a parallel particle simulator at the atomic, meso, or continuum scale.
In order to use this application you will first need to script a submit job. Below is a sample script. Edit it to your specific needs.
#$ -S /bin/bash
#$ -N name_of_your_job
#$ -o /work/abc123/output.log
#$ -pe openmpi 8
module load openmpi/gcc/64/1.10.1
module load lammps
mpirun -np 8 /usr/lib64/openmpi/bin/lmp_g++ < input_file > out
Now submit your job file using qsub
[abc123@login-0-0 ~]$ qsub job_submit_file.sh
Your job 378 (job_submit_file.sh") has been submitted
- 25 Aug 2016