Software Installed on Shamu

Below is the list of software that is currently installed on Shamu. If you need additional software, please email your request to rcisg@utsa.edu.

All Software including Libraries and Applications

------------------------------------------- /cm/local/modulefiles -------------------------------------------
cluster-tools/7.3 dot gcc/6.1.0 module-git null python/3.6.1
cmd freeipmi/1.5.2 ipmitool/1.8.17 module-info openldap shared
------------------------------------------ /cm/shared/modulefiles -------------------------------------------
abaqus/2017 hpl/2.2
abaqus/6.12 hwloc/1.11.3
acml/gcc/64/5.3.1 infernal/1.1.2
acml/gcc/fma4/5.3.1 intel/13/64bit
acml/gcc/mp/64/5.3.1 intel/15/ifort
acml/gcc/mp/fma4/5.3.1 intel/16/64bit
acml/gcc-int64/64/5.3.1 intel-tbb-oss/ia32/44_20160526oss
acml/gcc-int64/fma4/5.3.1 intel-tbb-oss/intel64/44_20160526oss
acml/gcc-int64/mp/64/5.3.1 iozone/3_434
acml/gcc-int64/mp/fma4/5.3.1 java/1.8.0_131
acml/open64/64/5.3.1 lammps/20160725
acml/open64/fma4/5.3.1 lapack/gcc/64/3.6.0
acml/open64/mp/64/5.3.1 lapack/open64/64/3.6.0
acml/open64/mp/fma4/5.3.1 lis/1.5.66
acml/open64-int64/64/5.3.1 ls-bsr/1.0
acml/open64-int64/fma4/5.3.1 lsdyna/r910
acml/open64-int64/mp/64/5.3.1 lsdyna7/r610
acml/open64-int64/mp/fma4/5.3.1 lumerical/device
adina/9.2 lumerical/fdtd
anaconda/4.2.0 mace/1.1
anaconda2/4.3.1 mace/2.1
apbs/1.4.2.1 macs/1.4.2
aragorn/1.2.38 mathematica/11.0.1
barrnap/0.6 matlab/R2015a
bcftools/1.3.1 matlab/R2016a
bcl2fastq2/2.17 matlab/R2016b
bedtools/2.25.0 matlab/R2017a
bioperl/1.007001 meme/4.11.2
bismark/0.18.2 mkl/10.0.3.020
blacs/openmpi/gcc/64/1.1patch03 mkl/2013.0.079
blacs/openmpi/open64/64/1.1patch03 mkl/2016.3.210
blas/gcc/64/3.6.0 mpich/ge/gcc/64/3.2rc2
blas/open64/64/3.6.0 mpich/ge/open64/64/3.2rc2
blast/2.2.26 mpiexec/0.84_432
blast/2.6.0 mugsy/2.3
bonnie++/1.97.1 mvapich2/gcc/64/2.2rc1
bowtie/1.2.0 mvapich2/open64/64/2.2rc1
bowtie/2.3.2 namd2/linux-x86_64-ibverbs
bwa/0.7.15 namd2/linux-x86_64-ibverbs-smp-cuda
canopy/1.7.4 namd2/linux-x86_64-multicore
canu/1.4 namd2/linux-x86_64-multicore-CUDA
canu/1.5 namd2/linux-x86_64-openmpi
cellranger/1.2.1 netcdf/gcc/64/4.4.0
cellranger/1.3.0 netcdf/open64/64/4.4.0
cellranger/2.0.0 netperf/2.7.0
clBLAS/2.12 nrn/7.4
cmgui/7.3 nwchem/6.6
Columbus/6 nwchem/6.6-openmpi
Columbus/7.0 octave/4.2.1
cplex/12.7.1 open64/4.5.2.1
cuda75/blas/7.5.18 openblas/dynamic/0.2.18
cuda75/fft/7.5.18 openfoam/3.0.1
cuda75/gdk/352.79 openlava/3.3.3
cuda75/nsight/7.5.18 openmpi/gcc/64/1.10.1
cuda75/profiler/7.5.18 openmpi/open64/64/1.10.1
cuda75/toolkit/7.5.18 paraview/4.4.0
cuda80/blas/8.0.44 paraview/5.0.0
cuda80/fft/8.0.44 paup/4a150
cuda80/gdk/352.79 pbspro/13.1.0.160576
cuda80/nsight/8.0.44 petsc/openmpi/gcc/3.7.2
cuda80/profiler/8.0.44 prodigal/2.50
cuda80/toolkit/8.0.44 prokka/1.12
cudnn/5.0 pycharm/2017.1.3
cudnn/6.0 python/3.6.1
cufflinks/2.2.1 quast/4.5
default-environment R/3.4.0
fftw2/openmpi/gcc/64/double/2.1.5 RAxML/8.2.11
fftw2/openmpi/gcc/64/float/2.1.5 rMATS/3.2.5
fftw2/openmpi/open64/64/double/2.1.5 rstudio/1.0.143
fftw2/openmpi/open64/64/float/2.1.5 samtools/1.3.1
fftw3/openmpi/gcc/64/3.3.4 scalapack/openmpi/gcc/64/2.0.2
fftw3/openmpi/open64/64/3.3.4 sge/2011.11p1
fiji/fiji simvascular/2.0.20624
gamess/current slurm/16.05.2
gdb/7.11 spades/3.10.1
globalarrays/openmpi/gcc/64/5.4 spss/24
globalarrays/openmpi/open64/64/5.4 star/2.5.3a
gmsh/2.9.3 systemc/2.3.1a
gnuplot/5.0.1 tbl2asn/25.3
grace/5.1.25 tophat/2.1.1
gsl/2.1 trimmomatic/0.36
hdf5/1.6.10 turbovnc/20160823
hdf5_18/1.8.17 usearch/7.0.1090
hdfview/2.13.0 usearch/9.2.64
hmmer/3.1b2 vmd/1.9.2
homer/4.8 vsearch/2.4.3

Libraries

acml/gcc/64/5.3.1 
acml/gcc/fma4/5.3.1 
acml/gcc/mp/64/5.3.1 
acml/gcc/mp/fma4/5.3.1 
acml/gcc-int64/64/5.3.1 
acml/gcc-int64/fma4/5.3.1 
acml/gcc-int64/mp/64/5.3.1 
acml/gcc-int64/mp/fma4/5.3.1 
acml/open64/64/5.3.1 
acml/open64/fma4/5.3.1 
acml/open64/mp/64/5.3.1 
acml/open64/mp/fma4/5.3.1 
acml/open64-int64/64/5.3.1
acml/open64-int64/fma4/5.3.1 
acml/open64-int64/mp/64/5.3.1 
acml/open64-int64/mp/fma4/5.3.1 
blacs/openmpi/gcc/64/1.1patch03 
blacs/openmpi/open64/64/1.1patch03
blas/gcc/64/3.6.0 
blas/open64/64/3.6.0
fftw2/openmpi/gcc/64/double/2.1.5 
fftw2/openmpi/gcc/64/float/2.1.5 
fftw2/openmpi/open64/64/double/2.1.5 
fftw2/openmpi/open64/64/float/2.1.5 
fftw3/openmpi/gcc/64/3.3.4 
fftw3/openmpi/open64/64/3.3.4
globalarrays/openmpi/gcc/64/5.4 
globalarrays/openmpi/open64/64/5.4 
hdf5/1.6.10 
hdf5_18/1.8.17
lapack/gcc/64/3.6.0
lapack/open64/64/3.6.0
lis/1.5.66/1.5.66
open64/4.5.2.1
openblas/dynamic/0.2.18
openlava/3.3.3
openmpi/gcc/64/1.10.1
openmpi/open64/64/1.10.1
netcdf/gcc/64/4.4.0
netcdf/open64/64/4.4.0
petsc/openmpi/gcc/3.7.2
scalapack/openmpi/gcc/64/2.0.2

Compilers

GCC - 4.8.5, 6.1.0

Intel - 13, 15, 16

PGI - 12.9

Applications

Ansys - v17.1

Abaqus

Atlas - 3.10.1

Bowtie - 1.2.0

Bwa - 0.7.15

Cell Ranger - 1.2.1

CPLEX - 12.7.1

Fiji

Gamess - 03March2017

GNUPlot - 5.0.1

Grads - 2.1.a3

GMSH - 2.9.3

Homer - 4.8

LAMMPS

LS-Dyna

Mathematica - 10.1

Matlab - R2013a, R2015a, R2016a

Mugsy - 2.3

NAMD - 2.11

NWChem - 6.6

Octave - 4.0.0

OpenFOAM - 3.0.1

Paraview - 4.4.0, 5.0.0

Titan - 20141125

Wgrib

Wgrib2

Canopy - 1.7.4

Photoscan Pro

SimVascular - 2.0.20624

VMD - 1.9.2

-- AdminUser - 07 Jun 2016
Topic revision: r14 - 25 Jul 2017, AdminUser
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