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Abaqus
Abaqus Abaqus is used for both the modeling and analysis of mechanical components and assemblies (pre processing) and visualizing the finite element analysis resu...
r7 - 04 Aug 2020 - 19:00 by AdminUser
AbaqusUsageOnSHAMU
Main.AdminUser 02 Nov 2020 ABAQUS at UTSA Introduction ABAQUS is a software suite from Dassault Systems. It can be used for finite element analysis and computer ...
r3 - 03 Nov 2020 - 18:13 by AdminUser
AboutShamuCluster
About Shamu cluster Shamu is UTSA's primary high performance (HPC) resource; heavily utilized by researchers, students, faculty and staff from a broad range of di...
r5 - 24 Jun 2020 - 19:39 by AdminUser
AdminGroup
%IF{"(NOT defined GROUP) OR $GROUP = ''" then=' How to add the first administrator If you haven\'t previously set up an administrator, follow these steps: (Note:...
r8 - 06 Aug 2023 - 11:24 by UnknownUser
AdminUser
Wiki Administrator User The AdminUser allows you to login without needing to register a user, or to temporarily login as AdminUser using the password set in confi...
NEW - 06 Aug 2023 - 11:24 by UnknownUser
AdminUserLeftBar
%ADDTOZONE{ "head" text=" #patternSideBarContents .foswikiUserName a:link, #patternSideBarContents .foswikiUserName a:visited { background:red; color:...
NEW - 06 Aug 2023 - 11:24 by UnknownUser
Anaconda-EnvironmentReportsCorruptedMetadataWhenYouTryToInstallPackages
If a conda environment reports errors like a "corrupted manifest" file or "package manifest can't be found" then you can perform this command to scrub all package...
NEW - 04 Aug 2020 - 20:11 by AdminUser
AnsysLumerical
Use Lumerical You can skip steps 1 10 on Shamu and ARC. You can skip steps 1 10 on Stampede2 if Lumerical executable path is provided. Please follow the instructi...
r8 - 28 Oct 2024 - 21:35 by AdminUser
Ansysv171
Ansys Ansys is a graphical program so you will need to have X11 forwarded in order to use this program. To run the program, qlogin to grab a compute node, load th...
r3 - 19 Mar 2019 - 19:39 by AdminUser
ApplicationCheckpointAndRestart
Checkpoint and Restart Checkpointing is the action of saving the state of a running process to a checkpoint image file. Restart is the actions to resume the check...
r9 - 14 Jul 2020 - 14:00 by AdminUser
Atlas
Name : atlasArch : x86_64Version : 3.10.1Release : 10.el7Size : 21 MRepo : installedSummary : Automatically Tuned Linear Algebra SoftwareURL : http://math atlas.s...
NEW - 03 Apr 2017 - 20:19 by AdminUser
Blender
Blender How to use Blender on Shamu to render your scenes or animations. First you will need to upload your *.blend file to your home directory. If you need more ...
r2 - 11 Apr 2018 - 18:45 by AdminUser
Bowtie
Bowtie Bowtie is an ultrafast, memory efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35 bp r...
NEW - 12 Jan 2017 - 19:41 by AdminUser
BrentLeague
BrentLeague
NEW - 16 Feb 2017 - 15:18 by RegistrationAgent
BrentTesting
BrentTesting
NEW - 01 Aug 2021 - 23:36 by RegistrationAgent
CProgrammingWithSelf-DefinedCheckpoint-and-Restart
Checkpoint and restart with DMTCP can create large disk images, and the checkpoint details are controlled by the third party system. To avoid the problems, the pr...
r2 - 12 Jul 2020 - 22:12 by AdminUser
CUDA
CUDA is a parallel computing platform and programming model developed by NVIDIA for general purpose computing on GPU devices. CUDA application can dramatically sp...
r5 - 06 Aug 2020 - 02:01 by AdminUser
Caffe
Caffe Interactive Usage on the GPU nodes Grab a GPU node with qlogin: abc123@login ~ $ qlogin q gpu.q abc123@login ~ $ module load caffe Copy the caffe exampl...
r2 - 10 Apr 2018 - 14:04 by AdminUser
CellRanger
Cell Ranger Cell Ranger is a set of analysis pipelines that processes Chromium single cell 3’ RNA seq output to align reads, generate gene cell matrices and perfo...
r4 - 04 Feb 2020 - 20:51 by AdminUser
Checkpoint-and-RestartForDeepLearningModelsWithTensorflow
By using the checkpoint feature, model progress can be saved during training. The model can resume training where it left off and avoid starting from scratch if s...
r3 - 14 Jan 2021 - 23:10 by AdminUser
CheckpointAndRestart
Checkpointing is the action of saving the state of a running process to a checkpoint image file. Restart is the actions to resume the checkpointed application fro...
NEW - 08 Jul 2020 - 22:01 by AdminUser
CheckpointAndRestartSequentialAndMulti-threadingApplicationsInteractively(nonBatch)
To checkpoint and restart an interactive job, follow the steps below: log onto a compute node from the login node. srun pty bash Load the dmtcp module module...
r2 - 13 Jul 2020 - 20:40 by AdminUser
CheckpointAndRestartSequentialAndMulti-threadingBatchJobs
Here is a Slurm job script for submit a job with checkpoint feature: #!/bin/bash# Put your SLURM options here#SBATCH partition=defq # change to proper par...
r2 - 14 Sep 2020 - 16:47 by AdminUser
CommonLanguagesAndCompilers
Common Languages and Compilers The Shamu research cluster contains many open source and licensed languages and compilers. Below is a list. Compilers Intel Parall...
r2 - 17 Jan 2017 - 22:40 by AdminUser
CommonProblems
Common Problems with Shamu This document will try to explain the most common issues and problems with Shamu. Why isn't my job running? Why can't I login? ...
NEW - 16 Jun 2017 - 20:07 by AdminUser
Cuda
Cuda Cuda is a GPU programming language developed by NVIDIA. Currently Shamu contains two (4) very high end GPU nodes consisting of eight (8) Telsa K80 GPU comput...
r2 - 24 Jun 2020 - 21:21 by AdminUser
DeepLearningModel
TensorFlow CPU Version First, grab a compute node with srun and start a Python Virtualenv environment: abc123@login 0 0 ~ $ srun n 80 N 1 time=48:00:00 pty b...
r5 - 18 Jan 2021 - 04:18 by AdminUser
DeepLearningModelParallelization
Parallelize Deep Learning Models Across Multiple GPU Devices Deep Learning models written in Tensorflow can automatically take advantage of a GPU device on a comp...
r5 - 16 Oct 2020 - 21:21 by AdminUser
EmbedDMTCPCheckpointAndRestartInCCode
In the previous examples, the checkpoint action is controlled by the coordinator, either by i number_of_second option or by manually type in 'c' in the coordinat...
NEW - 12 Jul 2020 - 16:40 by AdminUser
FAQ
Frequently Asked Questions Who can use Shamu? The Shamu research cluster is available at no charge to all University of Texas at San Antonio students, faculty an...
r4 - 14 Jul 2020 - 12:58 by AdminUser
Facilities
VizLab and SiViRT The UTSA Advanced Visualization Laboratory (VizLab), managed by the Office of Information Technology, allows researchers from all disciplines of...
r3 - 17 Aug 2017 - 15:44 by BrentLeague
Faculty
How to request an account on Shamu for Faculty Faculty members who wish to have an account on Shamu must submit their request via the form at https://utsa.az1.qua...
r3 - 17 Aug 2017 - 16:02 by AdminUser
Fall2018TrainingSchedule
Fall 2018 Training Schedule 9/7/2018 Intro to High Performance Computing Location: NPB 1.412 9/21/2018 Intro to Parallel Programming ...
NEW - 29 Aug 2018 - 20:40 by AdminUser
Fiji
Fiji Fiji is an image processing package—a "batteries included" distribution of ImageJ, bundling a lot of plugins which facilitate scientific image analysis. In o...
NEW - 25 Aug 2016 - 16:29 by AdminUser
Fluent
Fluent When running Fluent v16 or above in parallel batch mode, additional parameters need to be added to the Fluent command line. Fluent supports integration wit...
r5 - 23 Jul 2019 - 20:13 by AdminUser
GNUParallel
GNU Parallel is a shell tool for executing many sequential tasks at the same time on one or more nodes. It is useful for running a large number of sequential task...
r7 - 30 Jul 2020 - 20:51 by AdminUser
GPU
Sample GPU submit script using the Caffe training network Using the Tesla K80 cards: #SBATCH partition="gpu" #SBATCH nodes=1 #SBATCH gres=gpu:k80:1 . /etc/prof...
r3 - 21 Apr 2020 - 19:08 by AdminUser
Gamess
Gamess How to run Gamess on Shamu Run test job from the command line$ cd ~$ mkdir gamess $ mkdir /local/ insert your abc123 $ cp p /apps/gamess/tests/standard/ex...
r2 - 10 Mar 2020 - 18:08 by AdminUser
GettingHelp
Getting Help Shamu Office Hours Shamu Office hours are held in the Tech Cafe Monday through Friday 8am to 5pm. No appointment necessary, just drop by. Email UTS...
r6 - 24 Jun 2020 - 19:37 by AdminUser
GettingStarted
Getting Started with Shamu Shamu is the Research Support Groups premier cluster consisting of many compute cores and GPU cores. Connecting from Windows environme...
r16 - 24 Jun 2020 - 20:06 by AdminUser
Gizmo
Gizmo The simulation code GIZMO is a flexible, massively parallel, multi method multi physics code, with a wide range of different physics modules described in th...
NEW - 31 May 2018 - 14:34 by AdminUser
GridEngineJobSubmission
Grid Engine Job Submission In order to use the Grid Engine commands you first need to load the "sge" module: abc123@login 0 0 abc123 $ module load sge You can su...
r11 - 31 Oct 2019 - 15:57 by AdminUser
GroupTemplate
Edit this topic to add a description to the !
NEW - 06 Aug 2023 - 15:09 by UnknownUser
GroupViewTemplate
GroupViewTemplate %IF{ "'.GroupViewTemplate' allows 'change' AND 'GroupViewTemplate' = 'BaseGroup' AND 'GroupViewTemplate' = 'NobodyGroup' AND {AdminUser...
NEW - 06 Aug 2023 - 11:24 by UnknownUser
Gubbins
To install gubbins it's recommended that you install it into a python virtual environment. First follow the instruction to create a python VE here on this page (c...
r2 - 06 Dec 2018 - 20:16 by AdminUser
Hardware
Computing Resources Hardware
r8 - 23 May 2017 - 15:04 by AdminUser
Homer
Homer HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and ChIP Seq analysis. It is a collection of command line pr...
NEW - 12 Jan 2017 - 19:28 by AdminUser
Hoomd
HOOMD blue is a general purpose particle simulation toolkit. It performs hard particle Monte Carlo simulations of a variety of shape classes, and molecular dynami...
r2 - 04 Feb 2020 - 14:40 by AdminUser
IntelOneAPI
Intel oneAPI is an open, unified programming model built on standards to simplify the development and deployment of data centric workloads across CPUs, GPUs, FPGA...
NEW - 06 Apr 2021 - 20:00 by AdminUser
LAMMPS
LAMMPS LAMMPS is a classical molecular dynamics code, and an acronym for Large scale Atomic/Molecular Massively Parallel Simulator. LAMMPS has potentials for soli...
r3 - 04 Sep 2019 - 14:29 by AdminUser
LS-Dyna
LS Dyna LS Dyna is a general purpose finite element program capable of simulating complex real world problems. It is used by the automobile, aerospace, constructi...
NEW - 26 Aug 2016 - 16:15 by AdminUser
MFIX
MFiX is an open source multiphase flow solve. The detailed information can be found at https://mfix.netl.doe.gov/. The software is installed as a global shared Py...
r2 - 25 Mar 2021 - 19:53 by AdminUser
MXnet
MXnet Apache MXNet is a modern open source deep learning framework used to train, and deploy deep neural networks. It is scalable, allowing for fast model trainin...
r3 - 10 Jul 2018 - 17:49 by AdminUser
ManagingYourFiles
Managing your Files Users on Shamu are automatically granted several locations to store their files. Most users will be storing their files in one of two location...
r5 - 18 Jun 2019 - 13:59 by AdminUser
MandoRodriguez
MandoRodriguez
NEW - 12 Apr 2023 - 15:34 by RegistrationAgent
Mathematica
Sample submit script for non gui mode. You can copy/paste this script below to your Shamu directory, call it math.qsub. Submit the job on Shamu with qsub math.qsu...
r2 - 05 Feb 2020 - 13:56 by AdminUser
Matlab
Using Matlab Interactively (GUI mode) You can run Matlab with the srun command: abc123@login01 ~ $ srun pty bash abc123@compute003 ~ $ module load matlab...
r7 - 24 Jun 2020 - 21:18 by AdminUser
MessagePassingInterface(MPI)
MPI Basics MPI is standardized and portable standard which defines the syntax and semantics of library routines for users writing portable parallel programs in C,...
r6 - 18 Dec 2020 - 16:15 by AdminUser
ModuleEnvironments
Module Environments Each modulefile contains the information needed to configure the shell for an application. Once the Modules package is initialized, the enviro...
r3 - 24 Jul 2020 - 15:08 by AdminUser
MonitoringYourJobs
Monitoring your jobs Using the squeue Command Check the status of all jobs on Shamu using the squeue command (this is just an example compute names may be differ...
r4 - 14 Jul 2021 - 19:12 by AdminUser
Mugsy
Mugsy Mugsy is a multiple whole genome aligner. Mugsy uses Nucmer for pairwise alignment, a custom graph based segmentation procedure for identifying collinear re...
NEW - 30 Mar 2017 - 14:49 by AdminUser
NWChem
Name : nwchemArch : x86_64Version : 6.6.27746Release : 22.el7Size : 7.1 kRepo : epel/x86_64Summary : Delivering High Performance Computational Chemistry to Scienc...
NEW - 04 Apr 2017 - 14:21 by AdminUser
Network
Computing Resources Network The Shamu research cluster contains four (4) types of network configurations. * External network 10G public connection to the I...
r2 - 26 Jul 2017 - 15:43 by AdminUser
NobodyGroup
Used to prevent dangerous actions e.g. renaming put NobodyGroup as the only group allowed to rename a topic and it can't be renamed.
NEW - 06 Aug 2023 - 15:09 by UnknownUser
NonHPC
RCSG offers access to other software outside of the high performance computing environment. Please do not request access to these services if they are not needed ...
r2 - 19 Mar 2025 - 21:30 by AdminUser
NotebooksOnAzureCloud
Main.AdminUser 25 Sep 2019 You can make a free jupyter notebook on notebooks.azure.com by logging in to your microsoft account. After logging in if you go to 'My ...
r2 - 26 Sep 2019 - 19:44 by AdminUser
OpenFOAM
Sun Grid Engine submit file for OpenFOAM #!/bin/bash # #$ S /bin/bash #$ N name_of_job #$ pe openmpi 16 . /etc/profile.d/modules.sh # Load program modules modu...
NEW - 23 Jul 2019 - 14:46 by AdminUser
OpenMPI
OpenMPI Submit Script #!/bin/bash # #$ S /bin/bash export MYAPP=./test_openmpi export MYAPP_FLAGS='' #$ N TEST_OPENMPI #$ pe openmpi 4 . /etc/profile.d/...
r6 - 23 Jul 2019 - 15:16 by AdminUser
OpenSees
OpenSees is a software framework for developing applications to simulate the performance of structural and geotechnical systems subjected to earthquakes. We have ...
r2 - 04 Jan 2021 - 21:51 by AdminUser
OtherTools
Checkpoint and Restart Checkpointing is the action of saving the state of a running process to a checkpoint image file. Restart is the actions to resume the check...
NEW - 12 Jul 2020 - 16:18 by AdminUser
ParallelProgrammingInPython
Single Node Parallelization A program in Python programming language can utilize the power of the multiple CPU/Core on a computer to significantly improve the per...
r2 - 11 Aug 2020 - 22:37 by AdminUser
ParallelProgrammingInR
R parallelization with mclapply mclapply is a parallelized version of lapply if provided mc.cores 1. For mc.cores == 1, it simply calls lapply. By default, the m...
r4 - 14 May 2021 - 17:17 by AdminUser
Paraview
ParaView is an open source, multi platform data analysis and visualization application. ParaView users can quickly build visualizations to analyze their data usin...
NEW - 23 Jul 2019 - 14:57 by AdminUser
PerilNotebookExample
Main.AdminUser 26 Sep 2019 When you log into notebooks.azure.com go to your My Projects page. Click on Upload Github Repo and a form will come up. To upload the r...
NEW - 26 Sep 2019 - 20:37 by AdminUser
ProjectContributor
Project Contributor Not an actual user of this site, but a person devoting some of his/her time to contribute to the Foswiki Open Source project. ProjectContribut...
NEW - 06 Aug 2023 - 11:24 by UnknownUser
PythonEnvs-SavingAndImportingInAPackageList
It's handy to make a package list from your conda virtual environment in case you install something that breaks it or you want to replicate the packages exactly o...
NEW - 09 Feb 2021 - 02:00 by AdminUser
PythonVmsInAnaconda
If you need to install your own programs/modules in python you can do it via creating vms. Some programs may need specific versions of modules to work correctly a...
r6 - 13 Aug 2020 - 19:27 by AdminUser
QueueDefinitions
Partition Definitions There are eight (8) Slurm partitions on Shamu that users are able to utilize. Below are their definitions. * defq This is the main queu...
r8 - 24 Jul 2020 - 13:58 by AdminUser
QuickStartGuide
Quick Start Guide The Research Computing Support Group at UTSA provides computing, storage and visualization resources to support research that has specialized or...
r18 - 02 Nov 2020 - 22:41 by AdminUser
R-CorruptedRLibrariesWhenUsingBioconductor
If the user uses bioconductor for biology projects in R and their R library becomes corrupted you can do this command in the R prompt. BiocManager::valid() At t...
r2 - 25 Feb 2021 - 19:14 by AdminUser
R-ERRORC++14StandardRequestedButCXX14IsNotDefined
If you get the error: C 14 standard requested but CXX14 is not defined You need to create some environment variables that R can use to compile the code. If it do...
NEW - 14 Jan 2021 - 18:48 by AdminUser
REnvironments
Create local R library Repo As Python packages, we suggest that users maintain their R library repoes in the home directory. Install R libraries using 'install.p...
NEW - 02 Apr 2021 - 20:48 by AdminUser
REvnironmentsInAnaconda
Create local R library Repo As Python packages, we suggest that users maintain an R library repo in the home directory. Install R libraries using 'install.packag...
r3 - 02 Apr 2021 - 20:47 by AdminUser
RegistrationAgent
The RegistrationAgent User This is a user used by Foswiki when it registers new users. This user has special access to write to , and does not need an entry i...
NEW - 06 Aug 2023 - 15:09 by UnknownUser
RestartScriptGenerationExample
Here's a simple example of a checkpointing program being run with a slurm job script that will automatically generate a restart script for when you need to restar...
NEW - 14 Jul 2020 - 13:57 by AdminUser
RichardZanni
RichardZanni
NEW - 12 Apr 2023 - 15:24 by RegistrationAgent
RunningJobs
Running jobs on Shamu * Submitting your Batch Job Submit your code to run on the compute nodes. Create a submission script and specify options for better...
r3 - 20 Jan 2017 - 17:04 by AdminUser
RunningParallelBatchJobs
How to run Parallel Batch jobs On Shamu we have three (3) parallel Grid Engine environments but you only need to use one. First you need to load the "sge" module ...
NEW - 18 Aug 2016 - 19:00 by AdminUser
RunningYourInteractiveJobsThroughBatch
How to run interactive jobs If you want to use a GUI or have a short program you want to test or debug, we suggest using the "srun" command. This will automatical...
r7 - 12 Jun 2020 - 16:36 by AdminUser
SampleSGESubmitScripts
Sample SGE Submit Scripts * OpenMPI * Abaqus * Single Thread Job * R * GPU Main.AdminUser 17 May 2016
r4 - 14 Jun 2018 - 13:38 by AdminUser
SampleSlurmSubmitScripts
The page has been moved to UseSlurmOnShamu
r6 - 14 Jul 2020 - 21:49 by AdminUser
SettingUpPasswordlessLogin
To set up passwordless login you'll need to have set up an RSA key pair on your local machine for SSH. On linux and Mac OS. To generate an RSA keypair, just do t...
r2 - 16 Sep 2021 - 23:25 by AdminUser
SetupWindowsSubsystemForLinux(Advanced)
Windows Subsystem for Linux After the Windows 10 Fall Creators Update (FCU) released on October 17th 2017 Microsoft started to officially support on Windows OS th...
NEW - 24 Jun 2020 - 22:28 by AdminUser
ShamuFairUsePolicy
Shamu Fair Use Policy Effective July 13, 2020 Active Jobs Compute nodes will no longer be shared among multiple users. Instead, when a user grabs a compute nod...
r4 - 13 Jul 2020 - 15:13 by AdminUser
SimpleCheckpoingAndRestartForPythonUsingAClass
This is a simple example of a program that checkpoints using python and the pickle class. It will run for 15 minutes. The script checks for a file called "countin...
r2 - 13 Jul 2020 - 04:32 by AdminUser
SingleThreadJob
Simple Single Threaded Job Script From the command line create a new file called myjob.sh using Nano or VIM. Below is a simple script which sets your SGE environm...
r4 - 28 Aug 2018 - 18:20 by AdminUser
SitePreferences
SitePreferences %MAKETEXT{ "Foswiki's default preferences are located in _1 , however settings defined here have override priority and should be used for lo...
r3 - 06 Aug 2023 - 11:24 by UnknownUser
Slurm-NewJobSchedulingSystem
Main.AdminUser 01 Jul 2020 On July 13, 2020, the job scheduler Sun Grid Engine (SGE) on Shamu will be switched to Slurm, a new job scheduling system. Existing SGE...
r4 - 14 Jul 2020 - 22:08 by AdminUser
SoftwareAndApplications
Software Installed on Shamu Below is the list of software that is currently installed on Shamu. If you need additional software, please email your request to rcsg...
r32 - 03 Jun 2021 - 20:48 by AdminUser
Storage
Computing Resources Storage The Shamu research cluster has approximately 150TB of shared storage utilizing a high speed 56GB/s Infiniband network. We use two re...
r4 - 27 Jun 2018 - 13:52 by AdminUser
Students
How to request an account on Shamu for Students Students who wish to have an account on Shamu must fill out the online account submission form located here: https...
r3 - 18 Aug 2017 - 15:51 by AdminUser
SubmittingYourBatchJob
How to submit your batch job Using the Slurm sample script located here, you will be able to submit your job with this command but first you need to load the "slu...
r5 - 12 Jun 2020 - 16:39 by AdminUser
TensorFlow
We have the GPU version of TensorFlow installed on the GPU nodes with the Python 3.6.1 module install (native Python 2.7 version is currently not working). This d...
r15 - 26 Jun 2020 - 21:59 by AdminUser
ThomasFreeman
ThomasFreeman
NEW - 12 Apr 2023 - 15:34 by RegistrationAgent
Torch
Torch Torch is a scientific computing framework with wide support for machine learning algorithms that puts GPUs first. It is easy to use and efficient, thanks to...
NEW - 04 May 2018 - 16:35 by AdminUser
Training
Explore, register for, and review the trainings offered by the Research Computing group. NEC Code Vectorization and Vector Engine Training Recording Link Part 1...
r25 - 03 Apr 2025 - 14:12 by AdminUser
Trainings
Explore, register for, and review the trainings offered by the Research Computing group. 1 Linux * Slides: Express Linux Tutorial * Video Recording...
r3 - 28 Oct 2024 - 21:35 by AdminUser
TransferringFilesWithFilezilla
How to connect to shamu with filezilla to transfer files. This was done with filezilla 3.47.2.1 The quickconnect button When you open the program, there is a 'qu...
NEW - 10 Apr 2020 - 21:26 by AdminUser
TrevorNash
TrevorNash
NEW - 20 Jul 2022 - 21:06 by RegistrationAgent
UnknownUser
The UnknownUser User UnknownUser is a reserved name. If the UnknownUser appears, it is probably because author information for a topic could not be recovered, per...
NEW - 06 Aug 2023 - 11:24 by UnknownUser
UnprocessedRegistrations
FirstName LastName Email WikiName Mando Rodriguez Armando.Rodriguez #64;utsa.edu MandoRodriguez Thomas Freeman Thomas.Freeman #64;utsa.edu ...
NEW - 12 Apr 2023 - 15:34 by AdminUser
UnprocessedRegistrationsLog
Report for Bulk Register Registering MandoRodriguez * MandoRodriguez has been added to the password and user mapping managers * Writing topic Main.MandoRodri...
NEW - 12 Apr 2023 - 15:34 by AdminUser
UseSlurmOnShamu
Slurm (Simple Linux Utility for Resource Management) is a highly configurable workload manager and job scheduler for an HPC cluster. It is an open source software...
r9 - 23 Mar 2021 - 16:55 by AdminUser
UserHomepageHeader
Header of User Homepages Note: This is a maintenance topic, used by the Wiki administrator. The part between the horizontal rules gets included at the top of ever...
NEW - 06 Aug 2023 - 15:09 by UnknownUser
UserList
User List sorted by name %SEARCH{ "form.name~'*UserForm'" nosearch="on" type="query" header=" FirstName LastName Organization State Co...
r3 - 06 Aug 2023 - 15:09 by UnknownUser
UserListByDateJoined
User List sorted by date joined / updated %SEARCH{ "form.name~'*UserForm'" type="query" header=" Date joined Last updated FirstName...
r3 - 06 Aug 2023 - 15:09 by UnknownUser
UserListByLocation
User List sorted by location %SEARCH{ "form.name~'*UserForm'" type="query" header=" Country State FirstName LastName Organizat...
r3 - 06 Aug 2023 - 15:09 by UnknownUser
UserListHeader
Related topics: %SEARCH{ "name='WikiUsers' OR name='WikiGroups' OR name='UserList' OR name~'UserListBy*'" type="query" ...
NEW - 06 Aug 2023 - 15:09 by UnknownUser
UsingJetstream
Jetstream is a level 1 service provider of XSEDE (Extreme Science and Engineering Discovery Environment). It is a user friendly cloud computing environment for re...
r2 - 17 Oct 2020 - 03:19 by AdminUser
UsingSingularity
Singularity is available on Shamu for users to run container based applications. Users can access the software via the module system, as shown below: abc123@shamu...
r5 - 26 Aug 2020 - 22:49 by AdminUser
UsingTACCSResources
https://portal.tacc.utexas.edu/user guides To use TACC's Corral system you must request via TACC's User Portal for access: https://portal.tacc.utexas.edu/user gu...
r8 - 04 Aug 2020 - 14:57 by AdminUser
UsingTheGPUResources
The GPU resources on Shamu have been configured as a "consumable resource". This means you can request individual GPU cards, nodes, etc... We have two types of GP...
r4 - 20 Jul 2020 - 20:02 by AdminUser
UsingTheOnDemandPortal
Shamu OnDemand Portal We recently introduced the OnDemand Portal which allows you as a user to connect to Shamu via a web browser instead of an SSH client. The On...
r3 - 29 Oct 2020 - 22:04 by AdminUser
UsingTheSystems
Using the System * Managing your Files Store, manage and how to transfer files to Shamu * Queue Definitions Queue definitions * Module Envi...
r5 - 18 Jun 2019 - 12:54 by AdminUser
UsingYourAssignedJobQueueOrComputeNodes
How to use your assigned job queue or compute nodes If you have purchased equipment and had it installed in Shamu you have the ability to dedicate individual comp...
r2 - 18 Aug 2016 - 19:02 by AdminUser
VMD
VMD What is VMD? See also http://www.ks.uiuc.edu/Research/vmd/ VMD is designed for the visualization and analysis of biological systems such as protei...
NEW - 14 Oct 2016 - 20:24 by AdminUser
VisualFM
http://ccwu.me/vsfm/ VisualSFM is a GUI application for 3D reconstruction using structure from motion (SFM). The reconstruction system integrates several of my pr...
NEW - 08 Nov 2018 - 19:07 by AdminUser
WebAtom
Foswiki's Main web
NEW - 06 Aug 2023 - 11:24 by UnknownUser
NEW - 06 Aug 2023 - 11:24 by UnknownUser
WebHome
Congratulations, you have finished installing Foswiki. This site is running Foswiki release *, Plugin API version * To learn more about Foswiki, visit the web. P...
r77 - 06 Aug 2023 - 11:24 by UnknownUser
NEW - 06 Aug 2023 - 11:24 by UnknownUser
WebLeftBarExample
" warn="off"}% * ** * * * * * * %IF{"istopic ''" then=" * $percntICON{\"statistics\"}$percnt $percntMAKETEXT{\"Statist...
NEW - 06 Aug 2023 - 14:01 by UnknownUser
WebNotify
* .WikiGuest
NEW - 06 Aug 2023 - 11:24 by UnknownUser
WebPreferences
Main Web Preferences Appearance * Set WEBBGCOLOR = #FFEFA6 * web specific background color, current color * Set SITEMAPLIST = on * Set WEBSUMMAR...
NEW - 06 Aug 2023 - 11:24 by UnknownUser
WebRss
" else="Foswiki's Main web"}% /Main
NEW - 06 Aug 2023 - 11:24 by UnknownUser
NEW - 06 Aug 2023 - 11:24 by UnknownUser
NEW - 06 Aug 2023 - 11:24 by UnknownUser
WelcometoResearchComputingSupport
Welcome to Research Computing Support at UTSA! The Research Computing Support Group at UTSA provides computing, storage and visualization resources to support res...
NEW - 16 May 2016 - 14:46 by AdminUser
WhyCanTILogin
Why can't I log into Shamu? * You don't have an account on Shamu. All logins to Shamu are based on your campus myUTSA ID. * There could be a network issue f...
r2 - 09 May 2018 - 13:39 by AdminUser
WhyIsnTMyJobRunning
Why isn't my job running on Shamu? * System load is high on the compute nodes * A system downtime has been scheduled and jobs are being held. Check the mess...
r2 - 13 Oct 2017 - 14:42 by AdminUser
WikiGroups
Wiki groups dashboard Showing all known groups that can be used to define access controls in Foswiki. %TWISTY{ link=" " mode="div" }% ...
r3 - 06 Aug 2023 - 11:24 by UnknownUser
WikiGuest
The WikiGuest User A guest of this web, not unlike yourself. You can leave your trace behind you, just add your name in UserRegistration and create your own page....
NEW - 06 Aug 2023 - 11:24 by UnknownUser
ZhiweiWang
ZhiweiWang
NEW - 16 Feb 2017 - 15:19 by RegistrationAgent
Number of topics: 146
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